Analysis of interatomic Contacts of Structural Units in PDB entry:
1AGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AGJ entry

There are 2 chains in PDB entry 1AGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1GLU 242
B
 GLU 1GLU 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1AGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 18Right-handed alpha
Helix 2
2
A
22 24Right-handed 310
Helix 3
3
A
37 39Right-handed 310
Helix 4
4
A
43 45Right-handed 310
Helix 5
5
A
71 77Right-handed alpha
Helix 6
6
A
81 83Right-handed 310
Helix 7
7
A
135 138Right-handed alpha
Helix 8
8
A
180 182Right-handed 310
Helix 9
9
A
192 194Right-handed 310
Helix 10
10
A
231 240Right-handed alpha
Helix 11
11
B
4 18Right-handed alpha
Helix 12
12
B
22 24Right-handed 310
Helix 13
13
B
37 39Right-handed 310
Helix 14
14
B
43 45Right-handed 310
Helix 15
15
B
71 77Right-handed alpha
Helix 16
16
B
81 83Right-handed 310
Helix 17
17
B
135 138Right-handed alpha
Helix 18
18
B
180 182Right-handed 310
Helix 19
19
B
192 194Right-handed 310
Helix 20
20
B
231 240Right-handed alpha
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There are 6 sheets in PDB entry 1AGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
170 176anti-parallel
Strand 3
A
155 161anti-parallel
Strand 4
A
198 200anti-parallel
Strand 5
A
206 215anti-parallel
Strand 6
A
222 228anti-parallel
Strand 7
A
184 186anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
84 88anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
107 111anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
170 176anti-parallel
Strand 3
B
155 161anti-parallel
Strand 4
B
198 200anti-parallel
Strand 5
B
206 215anti-parallel
Strand 6
B
222 228anti-parallel
Strand 7
B
184 187anti-parallel
Strand 8
B
176 178anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
84 88anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
122 126anti-parallel
Strand 3
B
107 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il