Analysis of interatomic Contacts of Structural Units in PDB entry:
1AGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AGR entry

There are 4 chains in PDB entry 1AGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5PHE 354
D
 ALA 11PHE 354
E
 VAL 51THR 178
H
 ALA 60LEU 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 1AGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 32Right-handed alpha
Helix 2
2
A
46 56Right-handed alpha
Helix 3
3
A
63 91Right-handed alpha
Helix 4
4
A
98 113Right-handed 310
Helix 5
5
A
121 132Right-handed alpha
Helix 6
6
A
134 142Right-handed alpha
Helix 7
7
A
152 156Right-handed alpha
Helix 8
8
A
159 163Right-handed alpha
Helix 9
9
A
171 176Right-handed alpha
Helix 10
10
A
205 214Right-handed 310
Helix 11
11
A
227 229Right-handed 310
Helix 12
12
A
242 254Right-handed alpha
Helix 13
13
A
257 259Right-handed 310
Helix 14
14
A
271 280Right-handed alpha
Helix 15
15
A
283 285Right-handed 310
Helix 16
16
A
296 310Right-handed alpha
Helix 17
17
A
329 351Right-handed alpha
Helix 18
18
D
12 32Right-handed alpha
Helix 19
19
D
46 56Right-handed alpha
Helix 20
20
D
63 91Right-handed alpha
Helix 21
21
D
98 113Right-handed 310
Helix 22
22
D
121 131Right-handed alpha
Helix 23
23
D
134 142Right-handed alpha
Helix 24
24
D
152 156Right-handed alpha
Helix 25
25
D
159 163Right-handed alpha
Helix 26
26
D
171 176Right-handed alpha
Helix 27
27
D
205 214Right-handed 310
Helix 28
28
D
227 229Right-handed 310
Helix 29
29
D
242 254Right-handed alpha
Helix 30
30
D
257 259Right-handed 310
Helix 31
31
D
271 280Right-handed alpha
Helix 32
32
D
283 285Right-handed 310
Helix 33
33
D
296 310Right-handed alpha
Helix 34
34
D
329 351Right-handed alpha
Helix 35
35
E
53 61Right-handed alpha
Helix 36
36
E
63 68Right-handed alpha
Helix 37
37
E
70 82Right-handed alpha
Helix 38
38
E
86 100Right-handed 310
Helix 39
39
E
106 118Right-handed alpha
Helix 40
40
E
131 142Right-handed alpha
Helix 41
41
E
150 162Right-handed alpha
Helix 42
42
E
164 170Right-handed alpha
Helix 43
43
E
172 175Right-handed alpha
Helix 44
44
H
63 68Right-handed alpha
Helix 45
45
H
70 82Right-handed alpha
Helix 46
46
H
86 100Right-handed 310
Helix 47
47
H
104 118Right-handed alpha
Helix 48
48
H
131 139Right-handed alpha
Helix 49
49
H
150 162Right-handed alpha
Helix 50
50
H
164 170Right-handed alpha
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There are 2 sheets in PDB entry 1AGR. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
263 269parallel
Strand 3
A
220 226parallel
Strand 4
A
33 39parallel
Strand 5
A
194 201parallel
Strand 6
A
184 191anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
320 322first strand
Strand 2
D
263 269parallel
Strand 3
D
220 226parallel
Strand 4
D
33 39parallel
Strand 5
D
194 201parallel
Strand 6
D
184 191anti-parallel
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