Analysis of interatomic Contacts of Structural Units in PDB entry:
1AGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AGX entry

There is 1 chain in PDB entry 1AGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1TYR 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1AGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 38Right-handed alpha
Helix 2
2
A
42 47Right-handed alpha
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
63 79Right-handed alpha
Helix 5
5
A
91 93Right-handed 310
Helix 6
6
A
94 106Right-handed alpha
Helix 7
7
A
127 140Right-handed alpha
Helix 8
8
A
199 203Right-handed 310
Helix 9
9
A
229 237Right-handed alpha
Helix 10
10
A
256 267Right-handed alpha
Helix 11
11
A
290 295Right-handed alpha
Helix 12
12
A
303 315Right-handed alpha
Helix 13
13
A
320 329Right-handed alpha
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There are 3 sheets in PDB entry 1AGX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
3 8parallel
Strand 3
A
85 89parallel
Strand 4
A
112 115parallel
Strand 5
A
149 153parallel
Strand 6
A
156 159anti-parallel
Strand 7
A
182 185anti-parallel
Strand 8
A
188 191anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
174 175anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
242 247parallel
Strand 3
A
271 276parallel
Strand 4
A
297 298parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il