Analysis of interatomic Contacts of Structural Units in PDB entry:
1AHG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AHG entry

There are 2 chains in PDB entry 1AHG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5LEU 409
B
 MET 5LEU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 1AHG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 26Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
A
93 96Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
142 150Right-handed alpha
Helix 7
7
A
163 165Right-handed 310
Helix 8
8
A
170 176Right-handed alpha
Helix 9
9
A
202 214Right-handed alpha
Helix 10
10
A
235 246Right-handed 310
Helix 11
11
A
277 292Right-handed alpha
Helix 12
12
A
300 311Right-handed alpha
Helix 13
13
A
313 344Right-handed alpha
Helix 14
14
A
353 355Right-handed 310
Helix 15
15
A
367 377Right-handed alpha
Helix 16
16
A
389 391Right-handed 310
Helix 17
17
A
397 407Right-handed alpha
Helix 18
18
B
18 26Right-handed alpha
Helix 19
19
B
51 63Right-handed alpha
Helix 20
20
B
77 88Right-handed alpha
Helix 21
21
B
93 96Right-handed alpha
Helix 22
22
B
108 122Right-handed alpha
Helix 23
23
B
142 150Right-handed alpha
Helix 24
24
B
163 165Right-handed 310
Helix 25
25
B
170 179Right-handed alpha
Helix 26
26
B
202 215Right-handed alpha
Helix 27
27
B
238 246Right-handed alpha
Helix 28
28
B
277 292Right-handed alpha
Helix 29
29
B
300 311Right-handed alpha
Helix 30
30
B
313 344Right-handed alpha
Helix 31
31
B
351 355Right-handed 310
Helix 32
32
B
367 377Right-handed alpha
Helix 33
33
B
389 391Right-handed 310
Helix 34
34
B
397 408Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1AHG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
268 273anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
185 189parallel
Strand 6
A
129 135parallel
Strand 7
A
154 156parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 362first strand
Strand 2
A
386 388anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
268 273anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
218 223parallel
Strand 5
B
185 189parallel
Strand 6
B
129 136parallel
Strand 7
B
154 158parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 362first strand
Strand 2
B
386 388anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il