Analysis of interatomic Contacts of Structural Units in PDB entry:
1AIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AIV entry

There is 1 chain in PDB entry 1AIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 1AIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 29Right-handed alpha
Helix 2
2
A
42 50Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
126 134Right-handed alpha
Helix 5
5
A
150 153Right-handed alpha
Helix 6
6
A
195 199Right-handed alpha
Helix 7
7
A
212 215Right-handed alpha
Helix 8
8
A
261 272Right-handed alpha
Helix 9
9
A
293 295Right-handed 310
Helix 10
10
A
316 319Right-handed alpha
Helix 11
11
A
322 330Right-handed alpha
Helix 12
12
A
352 362Right-handed alpha
Helix 13
13
A
379 385Right-handed alpha
Helix 14
14
A
396 405Right-handed alpha
Helix 15
15
A
418 420Right-handed 310
Helix 16
16
A
465 474Right-handed alpha
Helix 17
17
A
524 533Right-handed alpha
Helix 18
18
A
542 544Right-handed 310
Helix 19
19
A
581 584Right-handed 310
Helix 20
20
A
601 614Right-handed alpha
Helix 21
21
A
653 657Right-handed alpha
Helix 22
22
A
659 669Right-handed alpha
Helix 23
23
A
675 684Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1AIV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
224 226anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
372 374parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 577first strand
Strand 2
A
566 569anti-parallel
Strand 3
A
433 438anti-parallel
Strand 4
A
537 541anti-parallel
Strand 5
A
452 455parallel
Strand 6
A
486 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 411first strand
Strand 2
A
594 597anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il