Analysis of interatomic Contacts of Structural Units in PDB entry:
1AJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AJD entry

There are 2 chains in PDB entry 1AJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LYS 449
B
 THR 1LYS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1AJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
29 37Right-handed alpha
Helix 2
H2
A
54 66Right-handed alpha
Helix 3
H3
A
72 78Right-handed alpha
Helix 4
H4
A
101 112Right-handed alpha
Helix 5
H5
A
131 140Right-handed alpha
Helix 6
H6
A
153 160Right-handed alpha
Helix 7
H7
A
170 177Right-handed alpha
Helix 8
H8
A
190 199Right-handed alpha
Helix 9
H9
A
207 213Right-handed alpha
Helix 10
H10
A
224 233Right-handed alpha
Helix 11
H11
A
239 246Right-handed alpha
Helix 12
H12
A
276 281Right-handed alpha
Helix 13
H13
A
298 313Right-handed alpha
Helix 14
H14
A
325 333Right-handed alpha
Helix 15
H15
A
334 360Right-handed alpha
Helix 16
H16
A
434 447Right-handed alpha
Helix 17
G1
B
29 37Right-handed alpha
Helix 18
G2
B
54 66Right-handed alpha
Helix 19
G3
B
72 78Right-handed alpha
Helix 20
G4
B
101 112Right-handed alpha
Helix 21
G5
B
131 140Right-handed alpha
Helix 22
G6
B
153 160Right-handed alpha
Helix 23
G7
B
170 177Right-handed alpha
Helix 24
G8
B
190 199Right-handed alpha
Helix 25
G9
B
207 213Right-handed alpha
Helix 26
G10
B
224 233Right-handed alpha
Helix 27
G11
B
239 246Right-handed alpha
Helix 28
G12
B
276 281Right-handed alpha
Helix 29
G13
B
298 313Right-handed alpha
Helix 30
G14
B
325 333Right-handed alpha
Helix 31
G15
B
334 360Right-handed alpha
Helix 32
G16
B
434 447Right-handed alpha
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There are 4 sheets in PDB entry 1AJD. Click on sheet of interest to get list of strands forming it: S1A, S2A, S1B, S2B,

There are 10 strands in S1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
80 85parallel
Strand 3
A
417 422anti-parallel
Strand 4
A
361 367anti-parallel
Strand 5
A
44 50parallel
Strand 6
A
316 323parallel
Strand 7
A
142 148parallel
Strand 8
A
201 205parallel
Strand 9
A
254 259parallel
Strand 10
A
235 237parallel
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There are 3 strands in S2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
397 402anti-parallel
Strand 3
A
386 391anti-parallel
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There are 10 strands in S1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 434first strand
Strand 2
B
80 85parallel
Strand 3
B
417 422anti-parallel
Strand 4
B
361 367anti-parallel
Strand 5
B
44 50parallel
Strand 6
B
316 323parallel
Strand 7
B
142 148parallel
Strand 8
B
201 205parallel
Strand 9
B
254 259parallel
Strand 10
B
235 237parallel
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There are 3 strands in S2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 377first strand
Strand 2
B
397 402anti-parallel
Strand 3
B
386 391anti-parallel
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