Analysis of interatomic Contacts of Structural Units in PDB entry:
1AJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AJO entry

There are 2 chains in PDB entry 1AJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3GLY 214
B
 VAL 1GLY 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1AJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 16Right-handed 310
Helix 2
2
A
64 67Right-handed alpha
Helix 3
3
A
124 126Right-handed 310
Helix 4
4
A
185 187Right-handed 310
Helix 5
5
B
14 16Right-handed 310
Helix 6
6
B
64 67Right-handed alpha
Helix 7
7
B
124 126Right-handed 310
Helix 8
8
B
185 187Right-handed 310
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There are 8 sheets in PDB entry 1AJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
192 199anti-parallel
Strand 4
A
175 183anti-parallel
Strand 5
A
52 59anti-parallel
Strand 6
A
150 154anti-parallel
Strand 7
A
106 108anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
76 87anti-parallel
Strand 6
A
135 139anti-parallel
Strand 7
A
127 129anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
94 96anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
146 148anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
205 211anti-parallel
Strand 3
B
192 199anti-parallel
Strand 4
B
175 183anti-parallel
Strand 5
B
52 59anti-parallel
Strand 6
B
150 154anti-parallel
Strand 7
B
106 108anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 42first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
19 26anti-parallel
Strand 4
B
161 168anti-parallel
Strand 5
B
76 87anti-parallel
Strand 6
B
135 139anti-parallel
Strand 7
B
127 129anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
94 96anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
146 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il