Analysis of interatomic Contacts of Structural Units in PDB entry:
1AJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AJS entry

There are 3 chains in PDB entry 1AJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 412
B
 ALA 1SER 257
B
 ASN 259GLN 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1AJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 25Right-handed alpha
Helix 2
2
A
51 61Right-handed alpha
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
A
93 96Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
141 150Right-handed 310
Helix 7
7
A
170 179Right-handed alpha
Helix 8
8
A
202 214Right-handed alpha
Helix 9
9
A
233 245Right-handed alpha
Helix 10
10
A
263 265Right-handed 310
Helix 11
11
A
277 292Right-handed alpha
Helix 12
12
A
301 310Right-handed alpha
Helix 13
13
A
313 343Right-handed alpha
Helix 14
14
A
351 355Right-handed alpha
Helix 15
15
A
367 375Right-handed alpha
Helix 16
16
A
389 391Right-handed 310
Helix 17
17
A
397 410Right-handed alpha
Helix 18
18
B
16 26Right-handed alpha
Helix 19
19
B
51 61Right-handed alpha
Helix 20
20
B
77 88Right-handed alpha
Helix 21
21
B
93 96Right-handed alpha
Helix 22
22
B
107 122Right-handed alpha
Helix 23
23
B
142 149Right-handed alpha
Helix 24
24
B
170 178Right-handed alpha
Helix 25
25
B
202 215Right-handed alpha
Helix 26
26
B
233 245Right-handed alpha
Helix 27
27
B
263 265Right-handed 310
Helix 28
28
B
277 292Right-handed alpha
Helix 29
29
B
301 311Right-handed alpha
Helix 30
30
B
313 343Right-handed alpha
Helix 31
31
B
351 355Right-handed 310
Helix 32
32
B
367 377Right-handed alpha
Helix 33
33
B
389 391Right-handed 310
Helix 34
34
B
397 410Right-handed alpha
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There are 6 sheets in PDB entry 1AJS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
185 189parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
155 159parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 362first strand
Strand 2
A
386 388anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 106first strand
Strand 2
B
267 273anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
218 223parallel
Strand 5
B
185 189parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
155 158parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 362first strand
Strand 2
B
386 388anti-parallel
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