Analysis of interatomic Contacts of Structural Units in PDB entry:
1AKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AKD entry

There is 1 chain in PDB entry 1AKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10VAL 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1AKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 22Right-handed 310
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
38 46Right-handed alpha
Helix 4
4
A
68 76Right-handed alpha
Helix 5
5
A
83 85Right-handed 310
Helix 6
6
A
90 95Right-handed alpha
Helix 7
7
A
107 119Right-handed 310
Helix 8
8
A
121 145Right-handed alpha
Helix 9
9
A
150 153Right-handed alpha
Helix 10
10
A
155 166Right-handed alpha
Helix 11
11
A
171 185Right-handed 310
Helix 12
12
A
193 213Right-handed alpha
Helix 13
13
A
219 224Right-handed alpha
Helix 14
14
A
235 250Right-handed alpha
Helix 15
15
A
253 266Right-handed alpha
Helix 16
16
A
268 276Right-handed alpha
Helix 17
17
A
278 291Right-handed 310
Helix 18
18
A
322 325Right-handed alpha
Helix 19
19
A
353 355Right-handed 310
Helix 20
20
A
360 375Right-handed alpha
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There are 3 sheets in PDB entry 1AKD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
317 320parallel
Strand 4
A
298 300anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
403 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il