Analysis of interatomic Contacts of Structural Units in PDB entry:
1AMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AMK entry

There is 1 chain in PDB entry 1AMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ARG 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1AMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
48 54Right-handed alpha
Helix 3
3
A
80 85Right-handed alpha
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
106 118Right-handed alpha
Helix 6
6
A
131 135Right-handed alpha
Helix 7
7
A
139 153Right-handed alpha
Helix 8
8
A
156 161Right-handed 310
Helix 9
9
A
169 171Right-handed 310
Helix 10
10
A
180 197Right-handed alpha
Helix 11
11
A
200 205Right-handed alpha
Helix 12
12
A
219 223Right-handed alpha
Helix 13
13
A
235 238Right-handed 310
Helix 14
14
A
240 248Right-handed 310
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There are 2 sheets in PDB entry 1AMK. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
6 11parallel
Strand 3
A
37 42parallel
Strand 4
A
60 63parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
122 127parallel
Strand 3
A
162 166parallel
Strand 4
A
208 210parallel
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