Analysis of interatomic Contacts of Structural Units in PDB entry:
1AMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AMO entry

There are 2 chains in PDB entry 1AMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 64SER 678
B
 VAL 64SER 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1AMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 76Right-handed alpha
Helix 2
2
A
90 98Right-handed alpha
Helix 3
3
A
102 104Right-handed 310
Helix 4
4
A
114 116Right-handed 310
Helix 5
5
A
119 127Right-handed 310
Helix 6
6
A
147 158Right-handed 310
Helix 7
7
A
183 195Right-handed alpha
Helix 8
8
A
212 231Right-handed alpha
Helix 9
9
A
255 257Right-handed 310
Helix 10
10
A
328 338Right-handed alpha
Helix 11
11
A
367 373Right-handed alpha
Helix 12
12
A
383 392Right-handed alpha
Helix 13
13
A
396 404Right-handed alpha
Helix 14
14
A
411 419Right-handed alpha
Helix 15
15
A
427 433Right-handed alpha
Helix 16
16
A
441 447Right-handed alpha
Helix 17
17
A
489 496Right-handed alpha
Helix 18
18
A
534 552Right-handed 310
Helix 19
19
A
576 584Right-handed alpha
Helix 20
20
A
605 611Right-handed alpha
Helix 21
21
A
613 622Right-handed alpha
Helix 22
22
A
636 651Right-handed alpha
Helix 23
23
A
656 668Right-handed alpha
Helix 24
24
B
69 76Right-handed alpha
Helix 25
25
B
90 98Right-handed alpha
Helix 26
26
B
102 104Right-handed 310
Helix 27
27
B
114 116Right-handed 310
Helix 28
28
B
119 127Right-handed 310
Helix 29
29
B
147 158Right-handed 310
Helix 30
30
B
183 195Right-handed alpha
Helix 31
31
B
212 231Right-handed alpha
Helix 32
32
B
255 257Right-handed 310
Helix 33
33
B
328 338Right-handed alpha
Helix 34
34
B
367 373Right-handed alpha
Helix 35
35
B
383 392Right-handed alpha
Helix 36
36
B
396 404Right-handed alpha
Helix 37
37
B
411 419Right-handed alpha
Helix 38
38
B
427 433Right-handed alpha
Helix 39
39
B
441 447Right-handed alpha
Helix 40
40
B
489 496Right-handed alpha
Helix 41
41
B
534 552Right-handed 310
Helix 42
42
B
576 584Right-handed alpha
Helix 43
43
B
605 611Right-handed alpha
Helix 44
44
B
613 622Right-handed alpha
Helix 45
45
B
636 651Right-handed alpha
Helix 46
46
B
656 668Right-handed alpha
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There are 8 sheets in PDB entry 1AMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
80 85parallel
Strand 3
A
132 138parallel
Strand 4
A
168 174parallel
Strand 5
A
204 207parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
319 322anti-parallel
Strand 3
A
508 514anti-parallel
Strand 4
A
282 291anti-parallel
Strand 5
A
300 306anti-parallel
Strand 6
A
468 474anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 479first strand
Strand 2
A
485 487anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 677first strand
Strand 2
A
626 632parallel
Strand 3
A
528 533parallel
Strand 4
A
560 566parallel
Strand 5
A
590 595parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
80 85parallel
Strand 3
B
132 138parallel
Strand 4
B
168 174parallel
Strand 5
B
204 207parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 457first strand
Strand 2
B
319 322anti-parallel
Strand 3
B
508 514anti-parallel
Strand 4
B
282 291anti-parallel
Strand 5
B
300 306anti-parallel
Strand 6
B
468 474anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
477 479first strand
Strand 2
B
485 487anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
672 677first strand
Strand 2
B
626 632parallel
Strand 3
B
528 533parallel
Strand 4
B
560 566parallel
Strand 5
B
590 595parallel
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