Analysis of interatomic Contacts of Structural Units in PDB entry:
1AMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AMX entry

There is 1 chain in PDB entry 1AMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 169ASN 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1AMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
219 221Right-handed 310
Helix 2
2
A
239 246Right-handed alpha
Helix 3
3
A
267 270Right-handed alpha
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There are 2 sheets in PDB entry 1AMX. Click on sheet of interest to get list of strands forming it: I, II,

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
273 283anti-parallel
Strand 4
A
215 228anti-parallel
Strand 5
A
232 234anti-parallel
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There are 5 strands in II sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 255first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
205 211anti-parallel
Strand 4
A
290 299anti-parallel
Strand 5
A
307 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il