Analysis of interatomic Contacts of Structural Units in PDB entry:
1AMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AMZ entry

There is 1 chain in PDB entry 1AMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLY 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1AMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 28Right-handed alpha
Helix 2
2
A
38 42Right-handed alpha
Helix 3
3
A
71 77Right-handed alpha
Helix 4
4
A
89 98Right-handed alpha
Helix 5
5
A
104 117Right-handed alpha
Helix 6
6
A
122 130Right-handed alpha
Helix 7
7
A
137 151Right-handed alpha
Helix 8
8
A
153 160Right-handed alpha
Helix 9
9
A
164 194Right-handed 310
Helix 10
10
A
209 217Right-handed alpha
Helix 11
11
A
222 234Right-handed alpha
Helix 12
12
A
243 254Right-handed alpha
Helix 13
13
A
258 269Right-handed alpha
Helix 14
14
A
275 291Right-handed 310
Helix 15
15
A
298 311Right-handed alpha
Helix 16
16
A
328 340Right-handed alpha
Helix 17
17
A
345 364Right-handed alpha
Helix 18
18
A
374 385Right-handed 310
Helix 19
19
A
390 414Right-handed 310
Helix 20
20
A
427 434Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1AMZ.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
63 66anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il