Analysis of interatomic Contacts of Structural Units in PDB entry:
1AOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AOF entry

There are 2 chains in PDB entry 1AOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 36TYR 567
B
 GLU 26TYR 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1AOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 64Right-handed alpha
Helix 2
2
A
66 69Right-handed alpha
Helix 3
3
A
83 89Right-handed alpha
Helix 4
4
A
91 100Right-handed alpha
Helix 5
5
A
117 128Right-handed alpha
Helix 6
6
A
139 145Right-handed alpha
Helix 7
7
A
152 154Right-handed 310
Helix 8
8
A
165 167Right-handed 310
Helix 9
9
A
174 176Right-handed 310
Helix 10
10
A
361 363Right-handed 310
Helix 11
11
A
464 467Right-handed alpha
Helix 12
12
A
475 477Right-handed 310
Helix 13
13
A
492 495Right-handed alpha
Helix 14
14
A
559 563Right-handed alpha
Helix 15
15
B
30 33Right-handed alpha
Helix 16
16
B
51 64Right-handed alpha
Helix 17
17
B
66 69Right-handed alpha
Helix 18
18
B
83 89Right-handed alpha
Helix 19
19
B
91 100Right-handed alpha
Helix 20
20
B
117 128Right-handed alpha
Helix 21
21
B
139 145Right-handed alpha
Helix 22
22
B
152 154Right-handed 310
Helix 23
23
B
165 167Right-handed 310
Helix 24
24
B
174 176Right-handed 310
Helix 25
25
B
361 363Right-handed 310
Helix 26
26
B
464 467Right-handed alpha
Helix 27
27
B
475 477Right-handed 310
Helix 28
28
B
492 496Right-handed alpha
Helix 29
29
B
559 563Right-handed alpha
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There are 16 sheets in PDB entry 1AOF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 558first strand
Strand 2
A
169 173anti-parallel
Strand 3
A
178 182anti-parallel
Strand 4
A
189 194anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 204first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
231 237anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
267 272anti-parallel
Strand 4
A
278 283anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
335 339anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
365 370anti-parallel
Strand 4
A
375 381anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 397first strand
Strand 2
A
401 407anti-parallel
Strand 3
A
413 418anti-parallel
Strand 4
A
431 436anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
470 474anti-parallel
Strand 3
A
487 490anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
A
516 522anti-parallel
Strand 3
A
530 535anti-parallel
Strand 4
A
540 545anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
556 558first strand
Strand 2
B
169 173anti-parallel
Strand 3
B
178 182anti-parallel
Strand 4
B
189 194anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 204first strand
Strand 2
B
210 215anti-parallel
Strand 3
B
219 224anti-parallel
Strand 4
B
231 237anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 247first strand
Strand 2
B
257 261anti-parallel
Strand 3
B
267 272anti-parallel
Strand 4
B
278 283anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 305first strand
Strand 2
B
311 316anti-parallel
Strand 3
B
321 326anti-parallel
Strand 4
B
335 339anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
355 360anti-parallel
Strand 3
B
365 370anti-parallel
Strand 4
B
375 381anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 397first strand
Strand 2
B
401 407anti-parallel
Strand 3
B
413 418anti-parallel
Strand 4
B
431 436anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 456first strand
Strand 2
B
470 474anti-parallel
Strand 3
B
487 490anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 506first strand
Strand 2
B
516 522anti-parallel
Strand 3
B
530 535anti-parallel
Strand 4
B
540 545anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il