Analysis of interatomic Contacts of Structural Units in PDB entry:
1AOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AOX entry

There are 2 chains in PDB entry 1AOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 139THR 339
B
 ARG 137GLY 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1AOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
159 172Right-handed alpha
Helix 2
2
A
203 212Right-handed alpha
Helix 3
3
A
223 233Right-handed alpha
Helix 4
4
A
237 239Right-handed 310
Helix 5
5
A
260 272Right-handed 310
Helix 6
6
A
284 288Right-handed alpha
Helix 7
7
A
294 301Right-handed alpha
Helix 8
8
A
308 311Right-handed alpha
Helix 9
9
A
318 333Right-handed 310
Helix 10
10
B
159 172Right-handed alpha
Helix 11
11
B
203 212Right-handed alpha
Helix 12
12
B
223 233Right-handed alpha
Helix 13
13
B
237 239Right-handed 310
Helix 14
14
B
260 272Right-handed 310
Helix 15
15
B
285 289Right-handed alpha
Helix 16
16
B
294 303Right-handed alpha
Helix 17
17
B
308 311Right-handed alpha
Helix 18
18
B
318 333Right-handed alpha
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There are 2 sheets in PDB entry 1AOX. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
275 282parallel
Strand 3
A
246 253parallel
Strand 4
A
144 151parallel
Strand 5
A
180 187parallel
Strand 6
A
191 195anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
181 187anti-parallel
Strand 3
B
144 151parallel
Strand 4
B
246 253parallel
Strand 5
B
275 282parallel
Strand 6
B
312 315parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il