Analysis of interatomic Contacts of Structural Units in PDB entry:
1AQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AQM entry

There is 1 chain in PDB entry 1AQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ASN 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1AQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
24 27Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
64 77Right-handed alpha
Helix 5
5
A
113 115Right-handed 310
Helix 6
6
A
124 129Right-handed 310
Helix 7
7
A
131 136Right-handed alpha
Helix 8
8
A
150 165Right-handed alpha
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
A
181 190Right-handed alpha
Helix 11
11
A
211 214Right-handed 310
Helix 12
12
A
223 235Right-handed alpha
Helix 13
13
A
238 243Right-handed 310
Helix 14
14
A
246 248Right-handed 310
Helix 15
15
A
253 255Right-handed 310
Helix 16
16
A
265 267Right-handed 310
Helix 17
17
A
278 293Right-handed 310
Helix 18
18
A
336 338Right-handed 310
Helix 19
19
A
340 351Right-handed alpha
Helix 20
20
A
374 376Right-handed 310
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There are 4 sheets in PDB entry 1AQM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
5 8parallel
Strand 3
A
31 34parallel
Strand 4
A
80 86parallel
Strand 5
A
170 174parallel
Strand 6
A
196 199parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
437 442anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
428 430anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
420 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il