Analysis of interatomic Contacts of Structural Units in PDB entry:
1AQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AQY entry

There are 2 chains in PDB entry 1AQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7GLU 294
B
 GLU 7MET 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1AQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed alpha
Helix 2
2
A
22 25Right-handed alpha
Helix 3
3
A
28 32Right-handed 310
Helix 4
4
A
51 62Right-handed alpha
Helix 5
5
A
75 78Right-handed alpha
Helix 6
6
A
92 97Right-handed alpha
Helix 7
7
A
111 113Right-handed 310
Helix 8
8
A
116 120Right-handed alpha
Helix 9
9
A
132 145Right-handed alpha
Helix 10
10
A
155 164Right-handed alpha
Helix 11
11
A
172 184Right-handed alpha
Helix 12
12
A
193 198Right-handed alpha
Helix 13
13
A
200 210Right-handed alpha
Helix 14
14
A
217 226Right-handed alpha
Helix 15
15
A
229 232Right-handed alpha
Helix 16
16
A
263 266Right-handed 310
Helix 17
17
A
270 283Right-handed alpha
Helix 18
18
B
8 11Right-handed alpha
Helix 19
19
B
22 24Right-handed 310
Helix 20
20
B
28 32Right-handed 310
Helix 21
21
B
51 63Right-handed alpha
Helix 22
22
B
75 78Right-handed alpha
Helix 23
23
B
92 97Right-handed alpha
Helix 24
24
B
116 120Right-handed alpha
Helix 25
25
B
132 145Right-handed alpha
Helix 26
26
B
155 163Right-handed alpha
Helix 27
27
B
172 184Right-handed alpha
Helix 28
28
B
193 198Right-handed alpha
Helix 29
29
B
200 210Right-handed alpha
Helix 30
30
B
217 226Right-handed alpha
Helix 31
31
B
229 233Right-handed alpha
Helix 32
32
B
263 266Right-handed 310
Helix 33
33
B
270 283Right-handed alpha
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There are 4 sheets in PDB entry 1AQY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
18 21anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
41 45parallel
Strand 3
A
124 129parallel
Strand 4
A
188 192parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
19 21anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
41 45parallel
Strand 3
B
125 129parallel
Strand 4
B
188 192parallel
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