Analysis of interatomic Contacts of Structural Units in PDB entry:
1AUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AUG entry

There are 4 chains in PDB entry 1AUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 210
B
 MET 211GLY 420
C
 MET 421GLY 630
D
 MET 631GLY 840
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1AUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 28Right-handed alpha
Helix 2
2
A
49 61Right-handed alpha
Helix 3
3
A
119 129Right-handed alpha
Helix 4
4
A
143 158Right-handed alpha
Helix 5
5
A
173 175Right-handed 310
Helix 6
6
A
186 202Right-handed alpha
Helix 7
7
B
230 238Right-handed alpha
Helix 8
8
B
259 271Right-handed alpha
Helix 9
9
B
329 339Right-handed alpha
Helix 10
10
B
353 368Right-handed alpha
Helix 11
11
B
383 385Right-handed 310
Helix 12
12
B
396 412Right-handed alpha
Helix 13
13
C
440 448Right-handed alpha
Helix 14
14
C
469 481Right-handed alpha
Helix 15
15
C
539 549Right-handed alpha
Helix 16
16
C
563 578Right-handed alpha
Helix 17
17
C
593 595Right-handed 310
Helix 18
18
C
606 622Right-handed alpha
Helix 19
19
D
650 658Right-handed alpha
Helix 20
20
D
679 691Right-handed alpha
Helix 21
21
D
749 759Right-handed alpha
Helix 22
22
D
773 788Right-handed alpha
Helix 23
23
D
803 805Right-handed 310
Helix 24
24
D
816 832Right-handed alpha
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There are 8 sheets in PDB entry 1AUG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 43first strand
Strand 2
A
3 10parallel
Strand 3
A
65 71parallel
Strand 4
A
163 169parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
112 114anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 253first strand
Strand 2
B
213 220parallel
Strand 3
B
275 281parallel
Strand 4
B
373 379parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
322 324anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
456 463first strand
Strand 2
C
423 430parallel
Strand 3
C
485 491parallel
Strand 4
C
583 589parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
503 505first strand
Strand 2
C
532 534anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
666 673first strand
Strand 2
D
633 640parallel
Strand 3
D
695 701parallel
Strand 4
D
793 799parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
713 715first strand
Strand 2
D
742 744anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il