Analysis of interatomic Contacts of Structural Units in PDB entry:
1AUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AUO entry

There are 2 chains in PDB entry 1AUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 218
B
 MET 1GLY 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1AUO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 38Right-handed alpha
Helix 2
2
A
57 59Right-handed 310
Helix 3
3
A
81 100Right-handed alpha
Helix 4
4
A
105 107Right-handed 310
Helix 5
5
A
115 125Right-handed alpha
Helix 6
6
A
153 157Right-handed alpha
Helix 7
7
A
173 186Right-handed alpha
Helix 8
8
A
203 216Right-handed alpha
Helix 9
9
B
31 38Right-handed alpha
Helix 10
10
B
57 59Right-handed 310
Helix 11
11
B
81 101Right-handed alpha
Helix 12
12
B
105 107Right-handed 310
Helix 13
13
B
115 125Right-handed alpha
Helix 14
14
B
155 157Right-handed 310
Helix 15
15
B
173 186Right-handed alpha
Helix 16
16
B
203 216Right-handed alpha
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There are 4 sheets in PDB entry 1AUO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
15 20parallel
Strand 4
A
108 113parallel
Strand 5
A
134 138parallel
Strand 6
A
160 165parallel
Strand 7
A
190 195parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 65anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
44 48anti-parallel
Strand 3
B
15 20parallel
Strand 4
B
108 113parallel
Strand 5
B
134 138parallel
Strand 6
B
160 165parallel
Strand 7
B
190 195parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
63 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il