Analysis of interatomic Contacts of Structural Units in PDB entry:
1AUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AUP entry

There is 1 chain in PDB entry 1AUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1TRP 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1AUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
19 31Right-handed alpha
Helix 3
3
A
33 38Right-handed alpha
Helix 4
4
A
40 45Right-handed alpha
Helix 5
5
A
47 51Right-handed alpha
Helix 6
6
A
100 116Right-handed alpha
Helix 7
7
A
137 154Right-handed alpha
Helix 8
8
A
170 184Right-handed alpha
Helix 9
9
A
208 223Right-handed alpha
Helix 10
10
A
240 252Right-handed alpha
Helix 11
11
A
275 285Right-handed alpha
Helix 12
12
A
292 298Right-handed 310
Helix 13
13
A
309 311Right-handed 310
Helix 14
14
A
328 337Right-handed alpha
Helix 15
15
A
352 360Right-handed alpha
Helix 16
16
A
369 372Right-handed alpha
Helix 17
17
A
375 382Right-handed alpha
Helix 18
18
A
396 419Right-handed alpha
Helix 19
19
A
426 445Right-handed alpha
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There are 4 sheets in PDB entry 1AUP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 65first strand
Strand 2
A
71 82anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
92 94parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
160 163parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
232 236parallel
Strand 3
A
255 261parallel
Strand 4
A
264 267anti-parallel
Strand 5
A
302 305anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
365 367parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il