Analysis of interatomic Contacts of Structural Units in PDB entry:
1AUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AUV entry

There are 2 chains in PDB entry 1AUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 112ALA 417
B
 GLY 110ALA 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1AUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
126 130Right-handed alpha
Helix 2
2
A
135 137Right-handed 310
Helix 3
3
A
148 150Right-handed 310
Helix 4
4
A
199 207Right-handed alpha
Helix 5
5
A
216 222Right-handed alpha
Helix 6
6
A
225 239Right-handed alpha
Helix 7
7
A
285 298Right-handed alpha
Helix 8
8
A
351 365Right-handed alpha
Helix 9
9
A
399 415Right-handed alpha
Helix 10
10
B
126 130Right-handed alpha
Helix 11
11
B
135 137Right-handed 310
Helix 12
12
B
199 207Right-handed alpha
Helix 13
13
B
216 221Right-handed alpha
Helix 14
14
B
225 239Right-handed alpha
Helix 15
15
B
285 298Right-handed alpha
Helix 16
16
B
351 365Right-handed alpha
Helix 17
17
B
399 415Right-handed alpha
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There are 8 sheets in PDB entry 1AUV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 146first strand
Strand 2
A
114 119parallel
Strand 3
A
182 185parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
161 164anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
266 269anti-parallel
Strand 4
A
280 282anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
310 319anti-parallel
Strand 3
A
369 377anti-parallel
Strand 4
A
382 388anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 146first strand
Strand 2
B
114 119parallel
Strand 3
B
182 185parallel
Strand 4
B
211 213parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
161 164anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 252first strand
Strand 2
B
302 306anti-parallel
Strand 3
B
266 269anti-parallel
Strand 4
B
280 282anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 326first strand
Strand 2
B
310 319anti-parallel
Strand 3
B
369 377anti-parallel
Strand 4
B
382 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il