Analysis of interatomic Contacts of Structural Units in PDB entry:
1AUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AUY entry

There are 3 chains in PDB entry 1AUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27THR 189
B
 MET 1THR 189
C
 MET 1THR 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1AUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 55Right-handed 310
Helix 2
2
A
57 65Right-handed alpha
Helix 3
3
A
82 86Right-handed alpha
Helix 4
4
A
104 109Right-handed 310
Helix 5
5
A
134 136Right-handed 310
Helix 6
6
B
53 55Right-handed 310
Helix 7
7
B
57 65Right-handed alpha
Helix 8
8
B
104 109Right-handed 310
Helix 9
9
C
53 55Right-handed 310
Helix 10
10
C
57 63Right-handed alpha
Helix 11
11
C
104 109Right-handed 310
Helix 12
12
C
134 136Right-handed 310
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There are 6 sheets in PDB entry 1AUY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
151 158anti-parallel
Strand 3
A
89 97anti-parallel
Strand 4
A
114 118anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
68 80anti-parallel
Strand 3
A
169 180anti-parallel
Strand 4
A
30 42anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
151 158anti-parallel
Strand 3
B
89 97anti-parallel
Strand 4
B
114 118anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
68 80anti-parallel
Strand 3
B
169 180anti-parallel
Strand 4
B
30 42anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 52first strand
Strand 2
C
151 158anti-parallel
Strand 3
C
89 97anti-parallel
Strand 4
C
114 118anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 131first strand
Strand 2
C
68 80anti-parallel
Strand 3
C
169 180anti-parallel
Strand 4
C
30 40anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il