Analysis of interatomic Contacts of Structural Units in PDB entry:
1AVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AVB entry

There are 2 chains in PDB entry 1AVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ILE 226
B
 SER 1ILE 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1AVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 15Right-handed 310
Helix 2
2
A
57 59Right-handed 310
Helix 3
3
A
100 102Right-handed 310
Helix 4
4
A
113 115Right-handed 310
Helix 5
5
A
147 149Right-handed 310
Helix 6
6
A
162 164Right-handed 310
Helix 7
7
A
188 191Right-handed alpha
Helix 8
8
A
208 210Right-handed 310
Helix 9
9
B
13 15Right-handed 310
Helix 10
10
B
57 59Right-handed 310
Helix 11
11
B
100 102Right-handed 310
Helix 12
12
B
113 115Right-handed 310
Helix 13
13
B
147 149Right-handed 310
Helix 14
14
B
162 164Right-handed 310
Helix 15
15
B
188 191Right-handed alpha
Helix 16
16
B
208 210Right-handed 310
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There are 4 sheets in PDB entry 1AVB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
212 225anti-parallel
Strand 3
A
63 75anti-parallel
Strand 4
A
153 161anti-parallel
Strand 5
A
166 173anti-parallel
Strand 6
A
178 185anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
196 204anti-parallel
Strand 4
A
83 91anti-parallel
Strand 5
A
118 123anti-parallel
Strand 6
A
128 133anti-parallel
Strand 7
A
140 143anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
212 225anti-parallel
Strand 3
B
63 75anti-parallel
Strand 4
B
153 161anti-parallel
Strand 5
B
166 173anti-parallel
Strand 6
B
178 185anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
196 204anti-parallel
Strand 4
B
83 91anti-parallel
Strand 5
B
118 123anti-parallel
Strand 6
B
128 133anti-parallel
Strand 7
B
140 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il