Analysis of interatomic Contacts of Structural Units in PDB entry:
1AVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AVO entry

There are 14 chains in PDB entry 1AVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ILE 63
B
 ALA 103GLY 242
C
 LEU 4ILE 63
D
 ALA 103GLY 242
E
 LEU 4ILE 63
F
 ALA 103GLY 242
G
 LEU 4ILE 63
H
 ALA 103GLY 242
I
 LEU 4ILE 63
J
 ALA 103GLY 242
K
 LEU 4ILE 63
L
 ALA 103GLY 242
M
 LEU 4ILE 63
N
 ALA 103GLY 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 1AVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 30Right-handed alpha
Helix 2
2
A
32 44Right-handed alpha
Helix 3
3
A
47 49Right-handed 310
Helix 4
4
B
108 138Right-handed alpha
Helix 5
5
B
148 190Right-handed alpha
Helix 6
6
B
196 232Right-handed alpha
Helix 7
7
B
234 238Right-handed alpha
Helix 8
8
C
8 30Right-handed alpha
Helix 9
9
C
32 44Right-handed alpha
Helix 10
10
C
47 49Right-handed 310
Helix 11
11
D
108 138Right-handed alpha
Helix 12
12
D
148 190Right-handed alpha
Helix 13
13
D
196 232Right-handed alpha
Helix 14
14
D
234 238Right-handed alpha
Helix 15
15
E
8 30Right-handed alpha
Helix 16
16
E
32 44Right-handed alpha
Helix 17
17
E
47 49Right-handed 310
Helix 18
18
F
108 138Right-handed alpha
Helix 19
19
F
148 190Right-handed alpha
Helix 20
20
F
196 232Right-handed alpha
Helix 21
21
F
234 238Right-handed alpha
Helix 22
22
G
8 30Right-handed alpha
Helix 23
23
G
32 44Right-handed alpha
Helix 24
24
G
47 49Right-handed 310
Helix 25
25
H
108 138Right-handed alpha
Helix 26
26
H
148 190Right-handed alpha
Helix 27
27
H
196 232Right-handed alpha
Helix 28
28
H
234 238Right-handed alpha
Helix 29
29
I
8 30Right-handed alpha
Helix 30
30
I
32 44Right-handed alpha
Helix 31
31
I
47 49Right-handed 310
Helix 32
32
J
108 138Right-handed alpha
Helix 33
33
J
148 190Right-handed alpha
Helix 34
34
J
196 232Right-handed alpha
Helix 35
35
J
234 238Right-handed alpha
Helix 36
36
K
8 30Right-handed alpha
Helix 37
37
K
32 44Right-handed alpha
Helix 38
38
K
47 49Right-handed 310
Helix 39
39
L
108 138Right-handed alpha
Helix 40
40
L
148 190Right-handed alpha
Helix 41
41
L
196 232Right-handed alpha
Helix 42
42
L
234 238Right-handed alpha
Helix 43
43
M
8 30Right-handed alpha
Helix 44
44
M
32 44Right-handed alpha
Helix 45
45
M
47 49Right-handed 310
Helix 46
46
N
108 138Right-handed alpha
Helix 47
47
N
148 190Right-handed alpha
Helix 48
48
N
196 232Right-handed alpha
Helix 49
49
N
234 238Right-handed alpha
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There are no sheets in PDB entry 1AVO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il