Analysis of interatomic Contacts of Structural Units in PDB entry:
1AVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AVP entry

There are 2 chains in PDB entry 1AVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 204
B
 GLY 205PHE 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1AVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed alpha
Helix 2
2
A
18 20Right-handed 310
Helix 3
3
A
77 84Right-handed alpha
Helix 4
4
A
89 99Right-handed alpha
Helix 5
5
A
122 135Right-handed alpha
Helix 6
6
A
147 149Right-handed 310
Helix 7
7
A
155 157Right-handed 310
Helix 8
8
A
164 181Right-handed alpha
Helix 9
9
A
183 195Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1AVP.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
55 61anti-parallel
Strand 3
A
66 70anti-parallel
Strand 4
A
104 110parallel
Strand 5
B
208 214anti-parallel
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