Analysis of interatomic Contacts of Structural Units in PDB entry:
1B29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B29 entry

There is 1 chain in PDB entry 1B29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ARG 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1B29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 51Right-handed alpha
Helix 2
2
A
79 85Right-handed 310
Helix 3
3
A
94 108Right-handed alpha
Helix 4
4
A
117 123Right-handed alpha
Helix 5
5
A
133 139Right-handed alpha
Helix 6
6
A
149 156Right-handed alpha
Helix 7
7
A
157 177Right-handed alpha
Helix 8
8
A
193 207Right-handed alpha
Helix 9
9
A
217 228Right-handed alpha
Helix 10
10
A
237 241Right-handed 310
Helix 11
11
A
243 247Right-handed 310
Helix 12
12
A
271 276Right-handed alpha
Helix 13
13
A
292 302Right-handed alpha
Helix 14
14
A
310 315Right-handed alpha
Helix 15
15
A
322 330Right-handed alpha
Helix 16
16
A
337 347Right-handed alpha
Helix 17
17
A
347 362Right-handed alpha
Helix 18
18
A
367 383Right-handed alpha
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There are 3 sheets in PDB entry 1B29. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
58 61anti-parallel
Strand 3
A
21 24parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
187 190parallel
Strand 3
A
250 252parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
305 306parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il