Analysis of interatomic Contacts of Structural Units in PDB entry:
1B35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B35 entry

There are 4 chains in PDB entry 1B35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ALA 260
B
 GLU 16ALA 270
C
 SER 1ASP 282
D
 ALA 1PHE 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1B35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1H1
A
11 14Right-handed alpha
Helix 2
1H2
A
33 38Right-handed alpha
Helix 3
1H3
A
46 49Right-handed alpha
Helix 4
1H4
A
91 95Right-handed alpha
Helix 5
1H5
A
96 98Right-handed 310
Helix 6
1H6
A
139 144Right-handed alpha
Helix 7
1H7
A
173 176Right-handed alpha
Helix 8
1H8
A
204 209Right-handed alpha
Helix 9
2H1
B
23 25Right-handed 310
Helix 10
2H2
B
57 61Right-handed alpha
Helix 11
2H3
B
72 75Right-handed alpha
Helix 12
2H4
B
102 107Right-handed alpha
Helix 13
2H5
B
110 116Right-handed alpha
Helix 14
2H6
B
150 152Right-handed 310
Helix 15
2H7
B
154 161Right-handed alpha
Helix 16
2H8
B
164 168Right-handed alpha
Helix 17
3H1
C
45 47Right-handed 310
Helix 18
3H2
C
56 60Right-handed alpha
Helix 19
3H3
C
106 111Right-handed alpha
Helix 20
3H4
C
157 159Right-handed 310
Helix 21
3H5
C
194 196Right-handed 310
Helix 22
3H6
C
206 208Right-handed 310
Helix 23
3H7
C
263 277Right-handed alpha
Helix 24
4H1
D
2 11Right-handed alpha
Helix 25
4H2
D
22 24Right-handed 310
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There are 12 sheets in PDB entry 1B35. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
230 239anti-parallel
Strand 3
A
105 114anti-parallel
Strand 4
A
178 182anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
231 233anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
215 220anti-parallel
Strand 4
A
127 133anti-parallel
Strand 5
A
166 171anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
244 246anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
121 123anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
35 40anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
238 240anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 187first strand
Strand 2
B
125 133anti-parallel
Strand 3
B
225 235anti-parallel
Strand 4
B
80 88anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 176first strand
Strand 2
B
141 148anti-parallel
Strand 3
B
206 214anti-parallel
Strand 4
B
96 102anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 93first strand
Strand 2
C
102 104anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 177first strand
Strand 2
C
121 128anti-parallel
Strand 3
C
231 240anti-parallel
Strand 4
C
64 72anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 167first strand
Strand 2
C
135 143anti-parallel
Strand 3
C
212 220anti-parallel
Strand 4
C
80 85anti-parallel
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