Analysis of interatomic Contacts of Structural Units in PDB entry:
1B47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B47 entry

There are 3 chains in PDB entry 1B47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 47THR 350
B
 PRO 47THR 350
C
 PRO 47THR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 1B47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 70Right-handed alpha
Helix 2
2
A
73 75Right-handed 310
Helix 3
3
A
84 102Right-handed alpha
Helix 4
4
A
106 110Right-handed alpha
Helix 5
5
A
113 141Right-handed alpha
Helix 6
6
A
146 168Right-handed alpha
Helix 7
7
A
170 172Right-handed 310
Helix 8
8
A
176 178Right-handed 310
Helix 9
9
A
184 194Right-handed alpha
Helix 10
10
A
202 212Right-handed alpha
Helix 11
11
A
218 228Right-handed alpha
Helix 12
12
A
238 248Right-handed alpha
Helix 13
13
A
251 262Right-handed 310
Helix 14
14
A
274 284Right-handed alpha
Helix 15
15
A
324 333Right-handed alpha
Helix 16
16
A
340 342Right-handed 310
Helix 17
17
B
53 71Right-handed alpha
Helix 18
18
B
73 75Right-handed 310
Helix 19
19
B
84 111Right-handed alpha
Helix 20
20
B
113 141Right-handed alpha
Helix 21
21
B
146 168Right-handed alpha
Helix 22
22
B
170 172Right-handed 310
Helix 23
23
B
176 178Right-handed 310
Helix 24
24
B
184 194Right-handed alpha
Helix 25
25
B
202 212Right-handed alpha
Helix 26
26
B
218 228Right-handed alpha
Helix 27
27
B
238 248Right-handed alpha
Helix 28
28
B
251 262Right-handed 310
Helix 29
29
B
274 284Right-handed alpha
Helix 30
30
B
324 334Right-handed alpha
Helix 31
31
B
340 342Right-handed 310
Helix 32
32
C
53 70Right-handed alpha
Helix 33
33
C
84 101Right-handed alpha
Helix 34
34
C
106 110Right-handed alpha
Helix 35
35
C
113 141Right-handed alpha
Helix 36
36
C
146 168Right-handed alpha
Helix 37
37
C
170 172Right-handed 310
Helix 38
38
C
176 178Right-handed 310
Helix 39
39
C
184 194Right-handed alpha
Helix 40
40
C
202 212Right-handed alpha
Helix 41
41
C
218 228Right-handed alpha
Helix 42
42
C
238 247Right-handed alpha
Helix 43
43
C
251 262Right-handed 310
Helix 44
44
C
274 278Right-handed alpha
Helix 45
45
C
281 284Right-handed 310
Helix 46
46
C
324 333Right-handed alpha
Helix 47
47
C
340 342Right-handed 310
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There are 6 sheets in PDB entry 1B47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
235 237anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
303 308anti-parallel
Strand 3
A
314 317anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
235 237anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 317first strand
Strand 2
B
299 308anti-parallel
Strand 3
B
291 296anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 201first strand
Strand 2
C
235 237anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 295first strand
Strand 2
C
303 308anti-parallel
Strand 3
C
314 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il