Analysis of interatomic Contacts of Structural Units in PDB entry:
1B4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B4A entry

There are 6 chains in PDB entry 1B4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4LEU 149
B
 GLY 4LEU 149
C
 GLY 4LEU 149
D
 GLY 4LEU 149
E
 GLY 4LEU 149
F
 GLY 4LEU 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1B4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
22 31Right-handed alpha
Helix 3
3
A
38 47Right-handed alpha
Helix 4
4
A
72 83Right-handed alpha
Helix 5
5
A
103 113Right-handed alpha
Helix 6
6
A
135 146Right-handed alpha
Helix 7
7
B
5 16Right-handed alpha
Helix 8
8
B
22 31Right-handed alpha
Helix 9
9
B
38 47Right-handed alpha
Helix 10
10
B
72 83Right-handed alpha
Helix 11
11
B
103 113Right-handed alpha
Helix 12
12
B
135 146Right-handed alpha
Helix 13
13
C
5 16Right-handed alpha
Helix 14
14
C
22 30Right-handed alpha
Helix 15
15
C
38 48Right-handed alpha
Helix 16
16
C
72 83Right-handed alpha
Helix 17
17
C
103 113Right-handed alpha
Helix 18
18
C
135 146Right-handed alpha
Helix 19
19
D
5 16Right-handed alpha
Helix 20
20
D
22 31Right-handed alpha
Helix 21
21
D
38 47Right-handed alpha
Helix 22
22
D
72 83Right-handed alpha
Helix 23
23
D
103 113Right-handed alpha
Helix 24
24
D
135 146Right-handed alpha
Helix 25
25
E
5 16Right-handed alpha
Helix 26
26
E
22 31Right-handed alpha
Helix 27
27
E
38 47Right-handed alpha
Helix 28
28
E
72 83Right-handed alpha
Helix 29
29
E
103 113Right-handed alpha
Helix 30
30
E
135 146Right-handed alpha
Helix 31
31
F
5 16Right-handed alpha
Helix 32
32
F
22 31Right-handed alpha
Helix 33
33
F
38 47Right-handed alpha
Helix 34
34
F
72 83Right-handed alpha
Helix 35
35
F
103 113Right-handed alpha
Helix 36
36
F
135 146Right-handed alpha
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There are 12 sheets in PDB entry 1B4A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
60 63anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 90first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
118 123anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
60 63anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
93 98anti-parallel
Strand 3
B
127 132anti-parallel
Strand 4
B
118 123anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
60 64anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 90first strand
Strand 2
C
93 98anti-parallel
Strand 3
C
127 132anti-parallel
Strand 4
C
118 123anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 54first strand
Strand 2
D
60 63anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 90first strand
Strand 2
D
93 98anti-parallel
Strand 3
D
127 132anti-parallel
Strand 4
D
118 123anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 54first strand
Strand 2
E
60 63anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 90first strand
Strand 2
E
93 98anti-parallel
Strand 3
E
127 132anti-parallel
Strand 4
E
118 123anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
51 54first strand
Strand 2
F
60 63anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
84 90first strand
Strand 2
F
93 98anti-parallel
Strand 3
F
127 132anti-parallel
Strand 4
F
118 123anti-parallel
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