Analysis of interatomic Contacts of Structural Units in PDB entry:
1B78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B78 entry

There are 2 chains in PDB entry 1B78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10ILE 193
B
 LYS 10ILE 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1B78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
50 65Right-handed alpha
Helix 3
3
A
79 81Right-handed 310
Helix 4
4
A
86 95Right-handed 310
Helix 5
5
A
97 105Right-handed alpha
Helix 6
6
A
150 153Right-handed 310
Helix 7
7
A
164 166Right-handed 310
Helix 8
8
A
169 172Right-handed alpha
Helix 9
9
A
177 190Right-handed alpha
Helix 10
10
B
18 27Right-handed alpha
Helix 11
11
B
50 65Right-handed alpha
Helix 12
12
B
79 81Right-handed 310
Helix 13
13
B
86 95Right-handed 310
Helix 14
14
B
97 105Right-handed alpha
Helix 15
15
B
150 154Right-handed 310
Helix 16
16
B
164 166Right-handed 310
Helix 17
17
B
170 172Right-handed 310
Helix 18
18
B
177 191Right-handed alpha
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There are 4 sheets in PDB entry 1B78. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
36 39parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 78first strand
Strand 2
A
112 123anti-parallel
Strand 3
A
126 138anti-parallel
Strand 4
A
155 157anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
36 39parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
69 78anti-parallel
Strand 3
B
112 123anti-parallel
Strand 4
B
126 138anti-parallel
Strand 5
B
155 157anti-parallel
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