Analysis of interatomic Contacts of Structural Units in PDB entry:
1B8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B8F entry

There are 2 chains in PDB entry 1B8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLY 141
A
 ASP 145LEU 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1B8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 20Right-handed alpha
Helix 2
2
A
29 47Right-handed 310
Helix 3
3
A
60 62Right-handed 310
Helix 4
4
A
69 83Right-handed alpha
Helix 5
5
A
93 109Right-handed alpha
Helix 6
6
A
116 128Right-handed alpha
Helix 7
7
A
146 157Right-handed alpha
Helix 8
8
A
171 177Right-handed alpha
Helix 9
9
A
189 194Right-handed alpha
Helix 10
10
A
198 228Right-handed alpha
Helix 11
11
A
234 236Right-handed 310
Helix 12
12
A
238 244Right-handed alpha
Helix 13
13
A
247 260Right-handed alpha
Helix 14
14
A
265 269Right-handed alpha
Helix 15
15
A
280 283Right-handed alpha
Helix 16
16
A
285 308Right-handed alpha
Helix 17
17
A
332 360Right-handed alpha
Helix 18
18
A
362 365Right-handed alpha
Helix 19
19
A
369 371Right-handed 310
Helix 20
20
A
382 399Right-handed alpha
Helix 21
21
A
410 412Right-handed 310
Helix 22
22
A
420 451Right-handed alpha
Helix 23
23
A
459 469Right-handed alpha
Helix 24
24
A
482 493Right-handed alpha
Helix 25
25
A
498 500Right-handed 310
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There are 3 sheets in PDB entry 1B8F. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
25 27parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
167 170anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
322 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il