Analysis of interatomic Contacts of Structural Units in PDB entry:
1B8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B8J entry

There are 4 chains in PDB entry 1B8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ASP 101
A
 ALA 103LYS 449
B
 THR 1ASP 101
B
 ALA 103LYS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1B8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 36Right-handed alpha
Helix 2
2
A
55 66Right-handed alpha
Helix 3
3
A
104 111Right-handed alpha
Helix 4
4
A
132 138Right-handed alpha
Helix 5
5
A
154 159Right-handed alpha
Helix 6
6
A
171 177Right-handed alpha
Helix 7
7
A
179 181Right-handed 310
Helix 8
8
A
183 185Right-handed 310
Helix 9
9
A
191 198Right-handed alpha
Helix 10
10
A
210 212Right-handed 310
Helix 11
11
A
225 231Right-handed alpha
Helix 12
12
A
240 245Right-handed alpha
Helix 13
13
A
277 280Right-handed alpha
Helix 14
14
A
290 292Right-handed 310
Helix 15
15
A
299 312Right-handed alpha
Helix 16
16
A
324 331Right-handed 310
Helix 17
17
A
335 359Right-handed alpha
Helix 18
18
A
426 429Right-handed 310
Helix 19
19
A
435 446Right-handed alpha
Helix 20
20
B
30 36Right-handed alpha
Helix 21
21
B
55 66Right-handed alpha
Helix 22
22
B
104 111Right-handed alpha
Helix 23
23
B
132 138Right-handed alpha
Helix 24
24
B
154 159Right-handed alpha
Helix 25
25
B
171 177Right-handed alpha
Helix 26
26
B
179 181Right-handed 310
Helix 27
27
B
183 185Right-handed 310
Helix 28
28
B
191 198Right-handed alpha
Helix 29
29
B
208 212Right-handed 310
Helix 30
30
B
225 231Right-handed alpha
Helix 31
31
B
240 245Right-handed alpha
Helix 32
32
B
277 280Right-handed alpha
Helix 33
33
B
299 312Right-handed alpha
Helix 34
34
B
324 331Right-handed 310
Helix 35
35
B
335 359Right-handed alpha
Helix 36
36
B
426 429Right-handed 310
Helix 37
37
B
435 446Right-handed alpha
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There are 4 sheets in PDB entry 1B8J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
80 85parallel
Strand 3
A
417 422anti-parallel
Strand 4
A
362 367anti-parallel
Strand 5
A
44 50parallel
Strand 6
A
317 323parallel
Strand 7
A
142 147parallel
Strand 8
A
202 205parallel
Strand 9
A
255 258parallel
Strand 10
A
235 237parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
397 402anti-parallel
Strand 3
A
386 391anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 434first strand
Strand 2
B
80 85parallel
Strand 3
B
417 422anti-parallel
Strand 4
B
362 367anti-parallel
Strand 5
B
44 50parallel
Strand 6
B
317 323parallel
Strand 7
B
142 147parallel
Strand 8
B
202 205parallel
Strand 9
B
255 258parallel
Strand 10
B
235 237parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 377first strand
Strand 2
B
397 402anti-parallel
Strand 3
B
386 391anti-parallel
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