Analysis of interatomic Contacts of Structural Units in PDB entry:
1B8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B8P entry

There is 1 chain in PDB entry 1B8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1B8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 26Right-handed alpha
Helix 2
2
A
47 63Right-handed alpha
Helix 3
3
A
77 80Right-handed alpha
Helix 4
4
A
101 122Right-handed alpha
Helix 5
5
A
136 145Right-handed alpha
Helix 6
6
A
152 154Right-handed 310
Helix 7
7
A
160 174Right-handed alpha
Helix 8
8
A
178 180Right-handed 310
Helix 9
9
A
208 212Right-handed alpha
Helix 10
10
A
215 220Right-handed alpha
Helix 11
11
A
222 227Right-handed alpha
Helix 12
12
A
229 237Right-handed alpha
Helix 13
13
A
242 258Right-handed alpha
Helix 14
14
A
274 276Right-handed 310
Helix 15
15
A
304 327Right-handed alpha
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There are 3 sheets in PDB entry 1B8P. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
128 131parallel
Strand 3
A
86 89parallel
Strand 4
A
6 10parallel
Strand 5
A
37 42parallel
Strand 6
A
68 74parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
195 197anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
282 290anti-parallel
Strand 3
A
293 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il