Analysis of interatomic Contacts of Structural Units in PDB entry:
1B99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B99 entry

There are 6 chains in PDB entry 1B99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6GLU 155
B
 VAL 6GLU 155
C
 VAL 6GLU 155
D
 VAL 6GLU 155
E
 VAL 6GLU 155
F
 VAL 6GLU 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 1B99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed alpha
Helix 2
2
A
25 35Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
57 59Right-handed 310
Helix 5
5
A
65 72Right-handed alpha
Helix 6
6
A
87 95Right-handed alpha
Helix 7
7
A
100 102Right-handed 310
Helix 8
8
A
108 112Right-handed alpha
Helix 9
9
A
127 137Right-handed alpha
Helix 10
10
A
140 142Right-handed 310
Helix 11
11
B
17 21Right-handed alpha
Helix 12
12
B
25 35Right-handed alpha
Helix 13
13
B
49 55Right-handed alpha
Helix 14
14
B
57 59Right-handed 310
Helix 15
15
B
63 72Right-handed 310
Helix 16
16
B
87 95Right-handed alpha
Helix 17
17
B
100 102Right-handed 310
Helix 18
18
B
108 112Right-handed alpha
Helix 19
19
B
127 137Right-handed alpha
Helix 20
20
B
140 142Right-handed 310
Helix 21
21
C
17 21Right-handed alpha
Helix 22
22
C
25 35Right-handed alpha
Helix 23
23
C
49 55Right-handed alpha
Helix 24
24
C
57 59Right-handed 310
Helix 25
25
C
63 72Right-handed 310
Helix 26
26
C
87 95Right-handed alpha
Helix 27
27
C
100 102Right-handed 310
Helix 28
28
C
108 112Right-handed alpha
Helix 29
29
C
127 137Right-handed alpha
Helix 30
30
C
140 142Right-handed 310
Helix 31
31
D
17 21Right-handed alpha
Helix 32
32
D
25 35Right-handed alpha
Helix 33
33
D
49 55Right-handed alpha
Helix 34
34
D
57 59Right-handed 310
Helix 35
35
D
63 72Right-handed 310
Helix 36
36
D
87 95Right-handed alpha
Helix 37
37
D
100 102Right-handed 310
Helix 38
38
D
108 112Right-handed alpha
Helix 39
39
D
127 137Right-handed alpha
Helix 40
40
D
140 142Right-handed 310
Helix 41
41
E
17 21Right-handed alpha
Helix 42
42
E
25 35Right-handed alpha
Helix 43
43
E
49 55Right-handed alpha
Helix 44
44
E
57 59Right-handed 310
Helix 45
45
E
64 72Right-handed 310
Helix 46
46
E
87 95Right-handed alpha
Helix 47
47
E
100 102Right-handed 310
Helix 48
48
E
108 112Right-handed alpha
Helix 49
49
E
127 137Right-handed alpha
Helix 50
50
E
140 142Right-handed 310
Helix 51
51
F
17 21Right-handed alpha
Helix 52
52
F
25 35Right-handed alpha
Helix 53
53
F
49 55Right-handed alpha
Helix 54
54
F
57 59Right-handed 310
Helix 55
55
F
64 72Right-handed 310
Helix 56
56
F
87 95Right-handed alpha
Helix 57
57
F
100 102Right-handed 310
Helix 58
58
F
108 112Right-handed alpha
Helix 59
59
F
127 137Right-handed alpha
Helix 60
60
F
140 142Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1B99. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
10 15anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
38 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
10 15anti-parallel
Strand 3
B
76 83anti-parallel
Strand 4
B
38 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
10 15anti-parallel
Strand 3
C
76 83anti-parallel
Strand 4
C
38 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
121 123first strand
Strand 2
D
10 15anti-parallel
Strand 3
D
76 83anti-parallel
Strand 4
D
38 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 123first strand
Strand 2
E
10 15anti-parallel
Strand 3
E
76 83anti-parallel
Strand 4
E
38 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
121 123first strand
Strand 2
F
10 15anti-parallel
Strand 3
F
76 83anti-parallel
Strand 4
F
38 46anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il