Analysis of interatomic Contacts of Structural Units in PDB entry:
1BAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BAV entry

There are 4 chains in PDB entry 1BAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 307
B
 ALA 1ASN 307
C
 ALA 1ASN 307
D
 ALA 1ASN 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1BAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
73 89Right-handed alpha
Helix 3
3
A
94 100Right-handed alpha
Helix 4
4
A
113 121Right-handed alpha
Helix 5
5
A
174 186Right-handed alpha
Helix 6
6
A
214 234Right-handed 310
Helix 7
7
A
243 246Right-handed alpha
Helix 8
8
A
254 261Right-handed alpha
Helix 9
9
A
283 306Right-handed 310
Helix 10
10
B
15 28Right-handed alpha
Helix 11
11
B
73 89Right-handed alpha
Helix 12
12
B
94 102Right-handed alpha
Helix 13
13
B
113 121Right-handed alpha
Helix 14
14
B
143 145Right-handed 310
Helix 15
15
B
174 186Right-handed alpha
Helix 16
16
B
216 234Right-handed alpha
Helix 17
17
B
243 246Right-handed alpha
Helix 18
18
B
254 260Right-handed alpha
Helix 19
19
B
278 280Right-handed 310
Helix 20
20
B
283 306Right-handed 310
Helix 21
21
C
15 28Right-handed alpha
Helix 22
22
C
73 89Right-handed alpha
Helix 23
23
C
94 102Right-handed alpha
Helix 24
24
C
113 121Right-handed alpha
Helix 25
25
C
174 186Right-handed alpha
Helix 26
26
C
216 234Right-handed alpha
Helix 27
27
C
243 246Right-handed alpha
Helix 28
28
C
254 261Right-handed alpha
Helix 29
29
C
283 306Right-handed 310
Helix 30
30
D
15 28Right-handed alpha
Helix 31
31
D
73 89Right-handed alpha
Helix 32
32
D
94 100Right-handed alpha
Helix 33
33
D
113 121Right-handed alpha
Helix 34
34
D
143 145Right-handed 310
Helix 35
35
D
174 186Right-handed alpha
Helix 36
36
D
216 234Right-handed alpha
Helix 37
37
D
243 246Right-handed alpha
Helix 38
38
D
254 261Right-handed alpha
Helix 39
39
D
278 280Right-handed 310
Helix 40
40
D
283 305Right-handed 310
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There are 4 sheets in PDB entry 1BAV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
201 204parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
189 196parallel
Strand 5
A
61 66parallel
Strand 6
A
104 108parallel
Strand 7
A
46 52anti-parallel
Strand 8
A
33 40anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 242first strand
Strand 2
B
201 204parallel
Strand 3
B
265 270anti-parallel
Strand 4
B
189 196parallel
Strand 5
B
61 65parallel
Strand 6
B
104 108parallel
Strand 7
B
46 52anti-parallel
Strand 8
B
33 40anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 242first strand
Strand 2
C
201 204parallel
Strand 3
C
265 270anti-parallel
Strand 4
C
189 196parallel
Strand 5
C
61 65parallel
Strand 6
C
104 108parallel
Strand 7
C
46 52anti-parallel
Strand 8
C
33 40anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
239 242first strand
Strand 2
D
201 204parallel
Strand 3
D
265 270anti-parallel
Strand 4
D
189 196parallel
Strand 5
D
61 66parallel
Strand 6
D
104 108parallel
Strand 7
D
46 52anti-parallel
Strand 8
D
33 40anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il