Analysis of interatomic Contacts of Structural Units in PDB entry:
1BD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BD0 entry

There are 2 chains in PDB entry 1BD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 382
B
 ASN 2ILE 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1BD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
39 44Right-handed alpha
Helix 3
3
A
47 57Right-handed alpha
Helix 4
4
A
67 75Right-handed alpha
Helix 5
5
A
90 98Right-handed 310
Helix 6
6
A
108 115Right-handed alpha
Helix 7
7
A
142 154Right-handed alpha
Helix 8
8
A
176 191Right-handed alpha
Helix 9
9
A
204 209Right-handed alpha
Helix 10
10
A
222 225Right-handed 310
Helix 11
11
A
234 236Right-handed 310
Helix 12
12
A
265 267Right-handed 310
Helix 13
13
A
284 286Right-handed 310
Helix 14
14
A
290 294Right-handed 310
Helix 15
15
A
342 349Right-handed alpha
Helix 16
16
A
353 359Right-handed 310
Helix 17
17
B
14 27Right-handed alpha
Helix 18
18
B
39 44Right-handed alpha
Helix 19
19
B
47 57Right-handed alpha
Helix 20
20
B
67 76Right-handed alpha
Helix 21
21
B
90 98Right-handed 310
Helix 22
22
B
108 117Right-handed alpha
Helix 23
23
B
142 153Right-handed alpha
Helix 24
24
B
176 190Right-handed alpha
Helix 25
25
B
204 209Right-handed alpha
Helix 26
26
B
222 225Right-handed 310
Helix 27
27
B
234 236Right-handed 310
Helix 28
28
B
265 267Right-handed 310
Helix 29
29
B
284 286Right-handed 310
Helix 30
30
B
290 294Right-handed 310
Helix 31
31
B
342 349Right-handed alpha
Helix 32
32
B
353 359Right-handed alpha
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There are 10 sheets in PDB entry 1BD0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
8 13parallel
Strand 4
A
245 250anti-parallel
Strand 5
A
328 332anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
33 37parallel
Strand 3
A
61 64parallel
Strand 4
A
81 84parallel
Strand 5
A
101 105parallel
Strand 6
A
124 129parallel
Strand 7
A
158 164parallel
Strand 8
A
198 200parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
251 257anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
302 305anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
338 340anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 378first strand
Strand 2
B
365 370anti-parallel
Strand 3
B
8 13parallel
Strand 4
B
245 250anti-parallel
Strand 5
B
328 332anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
33 37parallel
Strand 3
B
61 64parallel
Strand 4
B
81 84parallel
Strand 5
B
101 105parallel
Strand 6
B
124 129parallel
Strand 7
B
158 164parallel
Strand 8
B
198 200parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 318first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
251 257anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 299first strand
Strand 2
B
302 305anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
338 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il