Analysis of interatomic Contacts of Structural Units in PDB entry:
1BD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BD7 entry

There are 2 chains in PDB entry 1BD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 87LYS 82
B
 GLU 87LYS 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1BD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 116Right-handed 310
Helix 2
2
A
137 139Right-handed 310
Helix 3
3
A
154 157Right-handed 310
Helix 4
4
A
9 11Right-handed 310
Helix 5
5
A
25 28Right-handed 310
Helix 6
6
A
65 67Right-handed 310
Helix 7
7
B
113 116Right-handed 310
Helix 8
8
B
154 157Right-handed 310
Helix 9
9
B
9 11Right-handed 310
Helix 10
10
B
25 28Right-handed 310
Helix 11
11
B
65 67Right-handed 310
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There are 8 sheets in PDB entry 1BD7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
77 79anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
60 62anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 146first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
166 170anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 106first strand
Strand 2
A
89 95anti-parallel
Strand 3
A
123 126anti-parallel
Strand 4
A
149 151anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
77 79anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
2 8anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
60 62anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 146first strand
Strand 2
B
130 136anti-parallel
Strand 3
B
166 170anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 106first strand
Strand 2
B
89 95anti-parallel
Strand 3
B
123 126anti-parallel
Strand 4
B
149 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il