Analysis of interatomic Contacts of Structural Units in PDB entry:
1BDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BDA entry

There are 2 chains in PDB entry 1BDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1PRO 244
B
 THR 1PRO 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1BDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 27Right-handed 310
Helix 2
2
A
57 59Right-handed 310
Helix 3
3
A
61 63Right-handed 310
Helix 4
4
A
165 167Right-handed 310
Helix 5
5
A
231 240Right-handed 310
Helix 6
6
B
24 27Right-handed 310
Helix 7
7
B
56 59Right-handed 310
Helix 8
8
B
61 63Right-handed 310
Helix 9
9
B
165 167Right-handed 310
Helix 10
10
B
231 240Right-handed alpha
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There are 5 sheets in PDB entry 1BDA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
81 90anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
51 54anti-parallel
Strand 6
A
38 48anti-parallel
Strand 7
A
30 36anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
198 203anti-parallel
Strand 4
A
206 215anti-parallel
Strand 5
A
226 230anti-parallel
Strand 6
A
180 183anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
64 68anti-parallel
Strand 3
B
81 90anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
51 55anti-parallel
Strand 6
B
40 48anti-parallel
Strand 7
B
30 34anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 140first strand
Strand 2
B
156 161anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
226 230anti-parallel
Strand 3
B
206 215anti-parallel
Strand 4
B
198 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il