Analysis of interatomic Contacts of Structural Units in PDB entry:
1BDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BDB entry

There is 1 chain in PDB entry 1BDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1BDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
39 52Right-handed alpha
Helix 3
3
A
63 77Right-handed alpha
Helix 4
4
A
96 98Right-handed 310
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
117 133Right-handed alpha
Helix 7
7
A
143 145Right-handed 310
Helix 8
8
A
153 173Right-handed alpha
Helix 9
9
A
195 197Right-handed 310
Helix 10
10
A
209 215Right-handed alpha
Helix 11
11
A
225 228Right-handed 310
Helix 12
12
A
230 236Right-handed alpha
Helix 13
13
A
238 241Right-handed alpha
Helix 14
14
A
255 257Right-handed 310
Helix 15
15
A
269 273Right-handed alpha
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There are 2 sheets in PDB entry 1BDB. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
7 11parallel
Strand 3
A
31 36parallel
Strand 4
A
53 57parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
178 184parallel
Strand 3
A
248 251parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il