Analysis of interatomic Contacts of Structural Units in PDB entry:
1BDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BDG entry

There is 1 chain in PDB entry 1BDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 13CYS 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1BDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
33 51Right-handed alpha
Helix 3
3
A
53 56Right-handed alpha
Helix 4
4
A
116 119Right-handed 310
Helix 5
5
A
123 141Right-handed alpha
Helix 6
6
A
185 196Right-handed alpha
Helix 7
7
A
209 220Right-handed alpha
Helix 8
8
A
246 248Right-handed 310
Helix 9
9
A
261 263Right-handed 310
Helix 10
10
A
276 284Right-handed alpha
Helix 11
11
A
294 297Right-handed alpha
Helix 12
12
A
299 315Right-handed alpha
Helix 13
13
A
326 329Right-handed 310
Helix 14
14
A
337 343Right-handed alpha
Helix 15
15
A
351 359Right-handed alpha
Helix 16
16
A
365 397Right-handed alpha
Helix 17
17
A
415 419Right-handed alpha
Helix 18
18
A
423 434Right-handed alpha
Helix 19
19
A
449 459Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1BDG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 207first strand
Strand 2
A
148 154parallel
Strand 3
A
78 85parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
106 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
234 241anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
407 413parallel
Strand 5
A
440 444parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il