Analysis of interatomic Contacts of Structural Units in PDB entry:
1BDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BDJ entry

There are 2 chains in PDB entry 1BDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 129
B
 LYS 658THR 774
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1BDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
17 27Right-handed alpha
Helix 2
H2
A
39 47Right-handed alpha
Helix 3
H3
A
65 74Right-handed alpha
Helix 4
H4
A
92 101Right-handed alpha
Helix 5
H5
A
113 127Right-handed alpha
Helix 6
G1
A
76 78Right-handed 310
Helix 7
A
B
659 662Right-handed alpha
Helix 8
B
B
665 674Right-handed alpha
Helix 9
C
B
678 704Right-handed alpha
Helix 10
D
B
707 723Right-handed alpha
Helix 11
E
B
727 736Right-handed alpha
Helix 12
F
B
744 773Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1BDJ.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
33 36parallel
Strand 3
A
51 56parallel
Strand 4
A
83 87parallel
Strand 5
A
105 108parallel
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