Analysis of interatomic Contacts of Structural Units in PDB entry:
1BEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BEB entry

There are 2 chains in PDB entry 1BEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5CYS 160
B
 GLN 5CYS 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1BEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 15Right-handed 310
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
113 115Right-handed 310
Helix 4
4
A
130 140Right-handed alpha
Helix 5
5
A
153 156Right-handed alpha
Helix 6
6
B
12 15Right-handed 310
Helix 7
7
B
29 31Right-handed 310
Helix 8
8
B
113 115Right-handed 310
Helix 9
9
B
130 141Right-handed alpha
Helix 10
10
B
153 158Right-handed alpha
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There are 3 sheets in PDB entry 1BEB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
91 97anti-parallel
Strand 3
B
102 108anti-parallel
Strand 4
B
118 123anti-parallel
Strand 5
B
20 26anti-parallel
Strand 6
B
147 150anti-parallel
Strand 7
A
147 150anti-parallel
Strand 8
A
20 26anti-parallel
Strand 9
A
118 123anti-parallel
Strand 10
A
102 108anti-parallel
Strand 11
A
91 97anti-parallel
Strand 12
A
81 83anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 73first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
42 48anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 73first strand
Strand 2
B
54 61anti-parallel
Strand 3
B
41 48anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il