Analysis of interatomic Contacts of Structural Units in PDB entry:
1BGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BGG entry

There are 4 chains in PDB entry 1BGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 448
B
 THR 2ARG 448
C
 THR 2ARG 448
D
 THR 2ARG 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 1BGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 21Right-handed alpha
Helix 2
2
A
34 39Right-handed alpha
Helix 3
3
A
54 70Right-handed 310
Helix 4
4
A
82 85Right-handed alpha
Helix 5
5
A
95 111Right-handed alpha
Helix 6
6
A
126 130Right-handed alpha
Helix 7
7
A
133 135Right-handed 310
Helix 8
8
A
137 153Right-handed alpha
Helix 9
9
A
167 175Right-handed alpha
Helix 10
10
A
187 210Right-handed alpha
Helix 11
11
A
233 246Right-handed alpha
Helix 12
12
A
248 256Right-handed alpha
Helix 13
13
A
261 270Right-handed alpha
Helix 14
14
A
280 284Right-handed alpha
Helix 15
15
A
330 343Right-handed 310
Helix 16
16
A
369 387Right-handed alpha
Helix 17
17
A
409 411Right-handed 310
Helix 18
18
A
430 441Right-handed alpha
Helix 19
19
B
18 21Right-handed alpha
Helix 20
20
B
27 29Right-handed 310
Helix 21
21
B
34 39Right-handed alpha
Helix 22
22
B
54 71Right-handed 310
Helix 23
23
B
95 111Right-handed alpha
Helix 24
24
B
126 130Right-handed alpha
Helix 25
25
B
133 135Right-handed 310
Helix 26
26
B
137 153Right-handed 310
Helix 27
27
B
167 175Right-handed alpha
Helix 28
28
B
187 210Right-handed alpha
Helix 29
29
B
233 246Right-handed alpha
Helix 30
30
B
248 256Right-handed alpha
Helix 31
31
B
261 270Right-handed alpha
Helix 32
32
B
280 284Right-handed alpha
Helix 33
33
B
330 343Right-handed 310
Helix 34
34
B
369 387Right-handed alpha
Helix 35
35
B
409 411Right-handed 310
Helix 36
36
B
430 441Right-handed alpha
Helix 37
37
C
18 21Right-handed alpha
Helix 38
38
C
34 39Right-handed alpha
Helix 39
39
C
54 70Right-handed 310
Helix 40
40
C
82 85Right-handed alpha
Helix 41
41
C
95 111Right-handed alpha
Helix 42
42
C
126 130Right-handed alpha
Helix 43
43
C
133 135Right-handed 310
Helix 44
44
C
137 153Right-handed alpha
Helix 45
45
C
167 175Right-handed alpha
Helix 46
46
C
187 211Right-handed alpha
Helix 47
47
C
233 246Right-handed alpha
Helix 48
48
C
261 269Right-handed alpha
Helix 49
49
C
280 284Right-handed alpha
Helix 50
50
C
330 343Right-handed 310
Helix 51
51
C
369 387Right-handed alpha
Helix 52
52
C
409 411Right-handed 310
Helix 53
53
C
430 441Right-handed alpha
Helix 54
54
D
18 21Right-handed alpha
Helix 55
55
D
34 39Right-handed alpha
Helix 56
56
D
54 70Right-handed 310
Helix 57
57
D
82 85Right-handed alpha
Helix 58
58
D
95 111Right-handed alpha
Helix 59
59
D
126 130Right-handed alpha
Helix 60
60
D
133 135Right-handed 310
Helix 61
61
D
137 153Right-handed alpha
Helix 62
62
D
167 175Right-handed alpha
Helix 63
63
D
187 210Right-handed alpha
Helix 64
64
D
233 246Right-handed alpha
Helix 65
65
D
248 256Right-handed alpha
Helix 66
66
D
261 269Right-handed alpha
Helix 67
67
D
280 284Right-handed alpha
Helix 68
68
D
330 343Right-handed 310
Helix 69
69
D
369 387Right-handed alpha
Helix 70
70
D
409 411Right-handed 310
Helix 71
71
D
430 441Right-handed alpha
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There are 16 sheets in PDB entry 1BGG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
443 445anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 398first strand
Strand 2
A
11 15parallel
Strand 3
A
75 79parallel
Strand 4
A
114 118parallel
Strand 5
A
160 162parallel
Strand 6
A
216 222parallel
Strand 7
A
290 294parallel
Strand 8
A
348 352parallel
Strand 9
A
392 395parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
299 303parallel
Strand 3
A
312 314anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
425 428anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
443 445anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 398first strand
Strand 2
B
11 15parallel
Strand 3
B
75 79parallel
Strand 4
B
114 118parallel
Strand 5
B
160 162parallel
Strand 6
B
216 222parallel
Strand 7
B
290 294parallel
Strand 8
B
348 352parallel
Strand 9
B
392 395parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 228first strand
Strand 2
B
299 303parallel
Strand 3
B
312 314anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 420first strand
Strand 2
B
425 428anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
443 445anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
394 398first strand
Strand 2
C
11 15parallel
Strand 3
C
75 79parallel
Strand 4
C
114 118parallel
Strand 5
C
160 162parallel
Strand 6
C
216 222parallel
Strand 7
C
290 294parallel
Strand 8
C
348 352parallel
Strand 9
C
392 395parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 228first strand
Strand 2
C
299 303parallel
Strand 3
C
312 314anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
417 420first strand
Strand 2
C
425 428anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
443 445anti-parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
394 398first strand
Strand 2
D
11 15parallel
Strand 3
D
75 79parallel
Strand 4
D
114 118parallel
Strand 5
D
160 162parallel
Strand 6
D
216 222parallel
Strand 7
D
290 294parallel
Strand 8
D
348 352parallel
Strand 9
D
392 395parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
226 228first strand
Strand 2
D
299 303parallel
Strand 3
D
312 314anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
417 420first strand
Strand 2
D
425 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il