Analysis of interatomic Contacts of Structural Units in PDB entry:
1BI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BI3 entry

There are 4 chains in PDB entry 1BI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ALA 101
A
 ARG 103GLU 225
B
 LEU 4ALA 101
B
 ARG 103VAL 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1BI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 21Right-handed alpha
Helix 2
2
A
27 34Right-handed alpha
Helix 3
3
A
38 50Right-handed alpha
Helix 4
4
A
66 88Right-handed alpha
Helix 5
5
A
94 106Right-handed alpha
Helix 6
6
A
110 119Right-handed alpha
Helix 7
7
A
135 138Right-handed alpha
Helix 8
8
A
152 155Right-handed alpha
Helix 9
9
A
170 172Right-handed 310
Helix 10
10
A
178 184Right-handed alpha
Helix 11
11
A
215 220Right-handed alpha
Helix 12
12
B
7 21Right-handed alpha
Helix 13
13
B
27 34Right-handed alpha
Helix 14
14
B
38 50Right-handed alpha
Helix 15
15
B
66 88Right-handed alpha
Helix 16
16
B
94 106Right-handed alpha
Helix 17
17
B
110 119Right-handed alpha
Helix 18
18
B
135 138Right-handed alpha
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There are 4 sheets in PDB entry 1BI3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
62 64anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
222 224anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
209 212anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
62 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il