Analysis of interatomic Contacts of Structural Units in PDB entry:
1BIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BIB entry

There is 1 chain in PDB entry 1BIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ARG 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1BIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
4 15Right-handed alpha
Helix 2
B
A
22 29Right-handed alpha
Helix 3
C
A
33 46Right-handed alpha
Helix 4
D
A
68 76Right-handed alpha
Helix 5
E
A
89 97Right-handed alpha
Helix 6
F
A
147 164Right-handed alpha
Helix 7
G
A
234 256Right-handed alpha
Helix 8
H
A
259 269Right-handed alpha
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There are 4 sheets in PDB entry 1BIB. Click on sheet of interest to get list of strands forming it: 1, 2, 3, 4,

There are 2 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
56 60anti-parallel
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There are 7 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
104 109parallel
Strand 3
A
129 139anti-parallel
Strand 4
A
200 210anti-parallel
Strand 5
A
182 192anti-parallel
Strand 6
A
175 180anti-parallel
Strand 7
A
170 173anti-parallel
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There are 3 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
274 280anti-parallel
Strand 3
A
313 317anti-parallel
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There are 3 strands in 4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
296 302anti-parallel
Strand 3
A
305 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il