Analysis of interatomic Contacts of Structural Units in PDB entry:
1BIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BIY entry

There is 1 chain in PDB entry 1BIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ARG 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1BIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
42 50Right-handed alpha
Helix 3
3
A
61 67Right-handed alpha
Helix 4
4
A
126 136Right-handed alpha
Helix 5
5
A
145 152Right-handed alpha
Helix 6
6
A
167 172Right-handed alpha
Helix 7
7
A
193 200Right-handed alpha
Helix 8
8
A
211 217Right-handed 310
Helix 9
9
A
221 226Right-handed alpha
Helix 10
10
A
239 241Right-handed 310
Helix 11
11
A
264 278Right-handed alpha
Helix 12
12
A
316 319Right-handed alpha
Helix 13
13
A
322 331Right-handed alpha
Helix 14
14
A
335 343Right-handed alpha
Helix 15
15
A
352 365Right-handed alpha
Helix 16
16
A
377 386Right-handed alpha
Helix 17
17
A
396 404Right-handed alpha
Helix 18
18
A
425 427Right-handed 310
Helix 19
19
A
448 450Right-handed 310
Helix 20
20
A
470 475Right-handed alpha
Helix 21
21
A
525 534Right-handed alpha
Helix 22
22
A
545 549Right-handed alpha
Helix 23
23
A
581 583Right-handed 310
Helix 24
24
A
601 618Right-handed alpha
Helix 25
25
A
657 661Right-handed alpha
Helix 26
26
A
663 675Right-handed alpha
Helix 27
27
A
679 687Right-handed alpha
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There are 10 sheets in PDB entry 1BIY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
35 37parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
74 80anti-parallel
Strand 4
A
307 309anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
87 89anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 251first strand
Strand 2
A
91 98anti-parallel
Strand 3
A
206 210anti-parallel
Strand 4
A
113 116parallel
Strand 5
A
155 158parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
227 231anti-parallel
Strand 3
A
235 238anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 350first strand
Strand 2
A
369 374parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
596 599anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 592first strand
Strand 2
A
433 439anti-parallel
Strand 3
A
540 544anti-parallel
Strand 4
A
455 458parallel
Strand 5
A
489 491parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
569 572anti-parallel
Strand 3
A
578 580anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
645 649anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il