Analysis of interatomic Contacts of Structural Units in PDB entry:
1BJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BJ3 entry

There are 2 chains in PDB entry 1BJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ALA 129
B
 ASP 1ALA 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1BJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
23 33Right-handed alpha
Helix 2
H2
A
45 56Right-handed alpha
Helix 3
H3
B
23 33Right-handed alpha
Helix 4
H4
B
45 56Right-handed alpha
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There are 4 sheets in PDB entry 1BJ3. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4,

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
123 129first strand
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There are 3 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
102 105first strand
Strand 3
A
114 118first strand
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There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 19first strand
Strand 2
B
115 123first strand
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There are 3 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 69first strand
Strand 2
B
96 99first strand
Strand 3
B
106 110first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il