Analysis of interatomic Contacts of Structural Units in PDB entry:
1BJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BJN entry

There are 4 chains in PDB entry 1BJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3GLN 197
A
 ASN 199GLY 362
B
 GLN 3GLN 197
B
 ASN 199GLY 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1BJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 24Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
36 38Right-handed 310
Helix 4
4
A
44 61Right-handed alpha
Helix 5
5
A
75 87Right-handed alpha
Helix 6
6
A
101 112Right-handed alpha
Helix 7
7
A
134 136Right-handed 310
Helix 8
8
A
186 188Right-handed 310
Helix 9
9
A
212 214Right-handed 310
Helix 10
10
A
224 226Right-handed 310
Helix 11
11
A
228 233Right-handed alpha
Helix 12
12
A
243 258Right-handed alpha
Helix 13
13
A
261 281Right-handed alpha
Helix 14
14
A
292 294Right-handed 310
Helix 15
15
A
307 319Right-handed 310
Helix 16
16
A
344 360Right-handed alpha
Helix 17
17
B
16 24Right-handed alpha
Helix 18
18
B
36 38Right-handed 310
Helix 19
19
B
44 61Right-handed alpha
Helix 20
20
B
75 87Right-handed alpha
Helix 21
21
B
101 112Right-handed alpha
Helix 22
22
B
134 136Right-handed 310
Helix 23
23
B
186 188Right-handed 310
Helix 24
24
B
212 214Right-handed 310
Helix 25
25
B
224 226Right-handed 310
Helix 26
26
B
228 233Right-handed alpha
Helix 27
27
B
243 259Right-handed alpha
Helix 28
28
B
261 281Right-handed alpha
Helix 29
29
B
292 294Right-handed 310
Helix 30
30
B
307 319Right-handed 310
Helix 31
31
B
344 360Right-handed alpha
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There are 8 sheets in PDB entry 1BJN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
206 211anti-parallel
Strand 3
A
191 195anti-parallel
Strand 4
A
171 174parallel
Strand 5
A
146 148parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
115 120parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
128 131anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
334 337anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
206 211anti-parallel
Strand 3
B
191 195anti-parallel
Strand 4
B
171 174parallel
Strand 5
B
146 148parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 98first strand
Strand 2
B
115 120parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 125first strand
Strand 2
B
128 131anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 302first strand
Strand 2
B
334 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il