Analysis of interatomic Contacts of Structural Units in PDB entry:
1BJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BJR entry

There are 2 chains in PDB entry 1BJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ALA 1ALA 279
I
 VAL 280ALA 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1BJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
8 13Right-handed alpha
Helix 2
2
E
47 49Right-handed 310
Helix 3
3
E
69 78Right-handed alpha
Helix 4
4
E
105 120Right-handed alpha
Helix 5
5
E
139 150Right-handed alpha
Helix 6
6
E
166 168Right-handed 310
Helix 7
7
E
170 173Right-handed alpha
Helix 8
8
E
223 239Right-handed alpha
Helix 9
9
E
248 254Right-handed alpha
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There are 2 sheets in PDB entry 1BJR. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 58first strand
Strand 2
E
89 94parallel
Strand 3
E
33 39parallel
Strand 4
E
126 131parallel
Strand 5
E
154 158parallel
Strand 6
E
178 183parallel
Strand 7
E
201 204parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
208 212first strand
Strand 2
E
216 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il