Analysis of interatomic Contacts of Structural Units in PDB entry:
1BJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BJT entry

There is 1 chain in PDB entry 1BJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 419GLY 1178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 1BJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
438 442Right-handed 310
Helix 2
2
A
451 464Right-handed alpha
Helix 3
3
A
492 502Right-handed alpha
Helix 4
4
A
534 545Right-handed alpha
Helix 5
5
A
581 590Right-handed alpha
Helix 6
6
A
607 629Right-handed 310
Helix 7
7
A
677 691Right-handed 310
Helix 8
8
A
701 713Right-handed alpha
Helix 9
9
A
721 732Right-handed alpha
Helix 10
10
A
741 749Right-handed alpha
Helix 11
11
A
780 782Right-handed 310
Helix 12
12
A
791 794Right-handed alpha
Helix 13
13
A
797 802Right-handed 310
Helix 14
14
A
824 827Right-handed alpha
Helix 15
15
A
846 857Right-handed alpha
Helix 16
16
A
909 920Right-handed alpha
Helix 17
17
A
949 958Right-handed alpha
Helix 18
18
A
960 963Right-handed alpha
Helix 19
19
A
990 1034Right-handed alpha
Helix 20
20
A
1045 1054Right-handed alpha
Helix 21
21
A
1114 1117Right-handed alpha
Helix 22
22
A
1121 1124Right-handed 310
Helix 23
23
A
1126 1147Right-handed alpha
Helix 24
24
A
1151 1176Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 1BJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 558first strand
Strand 2
A
520 525parallel
Strand 3
A
444 449parallel
Strand 4
A
469 475parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 578first strand
Strand 2
A
564 568anti-parallel
Strand 3
A
597 599anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
761 764first strand
Strand 2
A
784 787anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
830 833first strand
Strand 2
A
838 841anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
967 971first strand
Strand 2
A
883 887anti-parallel
Strand 3
A
875 880anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 935first strand
Strand 2
A
943 946anti-parallel
Strand 3
A
897 902anti-parallel
Strand 4
A
889 892anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
975 978first strand
Strand 2
A
984 987anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il